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rVarBase
SNP Report
Basic Infomation
Name
rs58911468  
dbSNP
Location
chr:12,40741678
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11564128
0.82[AFR][1000 genomes]
rs11564147
0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11564173
0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11564175
0.87[AFR][1000 genomes]
rs11564177
0.86[AFR][1000 genomes]
rs11564203
0.86[AFR][1000 genomes]
rs11564204
0.86[AFR][1000 genomes]
rs73275761
0.87[AFR][1000 genomes]
rs73277531
0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73277533
0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs919174
0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
LRRK2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)