SNP Report
Basic Infomation
| Name | rs9668092 dbSNP |
|---|---|
| Location | chr:12,40911713 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11177106 | 0.88[AFR][1000 genomes] |
| rs11177109 | 0.90[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs11564134 | 1.00[CEU][hapmap] |
| rs11564174 | 1.00[CEU][hapmap] |
| rs11564254 | 1.00[CEU][hapmap] |
| rs11564257 | 1.00[CEU][hapmap] |
| rs17128169 | 1.00[CEU][hapmap] |
| rs17128172 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs17128396 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs17521316 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7133098 | 0.83[YRI][hapmap] |
| rs7134318 | 1.00[EUR][1000 genomes] |
| rs7304329 | 0.82[YRI][hapmap] |
| rs73116213 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73116220 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73117999 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73119906 | 1.00[EUR][1000 genomes] |
| rs73119915 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MUC19 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014