SNP Report
Basic Infomation
| Name | rs17128172 dbSNP |
|---|---|
| Location | chr:12,40840467 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11564134 | 1.00[CEU][hapmap] |
| rs11564174 | 1.00[CEU][hapmap] |
| rs11564186 | 1.00[CEU][hapmap] |
| rs11564208 | 1.00[CEU][hapmap] |
| rs11564254 | 1.00[CEU][hapmap] |
| rs11564257 | 1.00[CEU][hapmap] |
| rs17128169 | 1.00[CEU][hapmap] |
| rs17128396 | 1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17521316 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7134318 | 1.00[EUR][1000 genomes] |
| rs73116213 | 1.00[EUR][1000 genomes] |
| rs73116220 | 1.00[EUR][1000 genomes] |
| rs73117999 | 1.00[EUR][1000 genomes] |
| rs73119906 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7315719 | 1.00[CEU][hapmap] |
| rs7315853 | 1.00[CEU][hapmap] |
| rs9668092 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258167 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014