SNP Report
Basic Infomation
| Name | rs11564186 dbSNP |
|---|---|
| Location | chr:12,40646238 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10450793 | 0.90[AFR][1000 genomes] |
| rs11564134 | 1.00[CEU][hapmap] |
| rs11564136 | 1.00[CEU][hapmap] |
| rs11564154 | 1.00[CEU][hapmap] |
| rs11564174 | 1.00[CEU][hapmap] |
| rs11564188 | 1.00[CEU][hapmap] |
| rs11564208 | 1.00[CEU][hapmap] |
| rs11564254 | 1.00[CEU][hapmap] |
| rs11564257 | 1.00[CEU][hapmap] |
| rs17128169 | 1.00[CEU][hapmap] |
| rs17128172 | 1.00[CEU][hapmap] |
| rs17519173 | 1.00[CEU][hapmap] |
| rs17519531 | 1.00[CEU][hapmap] |
| rs17519580 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes] |
| rs17521316 | 1.00[CEU][hapmap] |
| rs2254475 | 1.00[CEU][hapmap] |
| rs28365208 | 1.00[CEU][hapmap] |
| rs73106349 | 0.93[AFR][1000 genomes] |
| rs7315719 | 1.00[CEU][hapmap] |
| rs7315853 | 1.00[CEU][hapmap] |
| rs7316047 | 1.00[CEU][hapmap] |
| rs7974320 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CREB3L4 | Distal transcriptional regulation |
| SLC39A1 | Distal transcriptional regulation |
| MUC19 | Distal transcriptional regulation |
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014