SNP Report
Name | rs11564254   dbSNP |
---|---|
Location | chr:12,40808698 |
Allele | A/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11564134 | 1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11564154 | 1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11564174 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11564186 | 1.00[CEU][hapmap] |
rs11564188 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11564208 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11564257 | 1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1427262 | 0.82[YRI][hapmap] |
rs17128169 | 1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
rs17128172 | 1.00[CEU][hapmap] |
rs17128396 | 1.00[CEU][hapmap] |
rs17519531 | 1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes] |
rs17519580 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes] |
rs17521316 | 1.00[CEU][hapmap] |
rs28365208 | 1.00[CEU][hapmap] |
rs73094944 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73094986 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73097442 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73097447 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73097459 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73097463 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73097494 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73101527 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73102750 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73102757 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73102773 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73106320 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73106342 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73106345 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73106346 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73106349 | 1.00[AMR][1000 genomes] |
rs73106357 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73108321 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73108336 | 1.00[AFR][1000 genomes] |
rs73108342 | 1.00[AMR][1000 genomes] |
rs73108345 | 1.00[AMR][1000 genomes] |
rs73108347 | 1.00[AMR][1000 genomes] |
rs73108352 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73108357 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73108363 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73108365 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73108371 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73108376 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73114293 | 1.00[AMR][1000 genomes] |
rs73117528 | 1.00[AMR][1000 genomes] |
rs7315719 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7315853 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7974320 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9668092 | 1.00[CEU][hapmap] |
Symbol | Regulation type |
---|---|
MUC19 | Proximal transcriptional regulation |
ENSG00000258167 | Distal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
FOXG1 | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014