SNP Report

Basic Infomation

Name	rs11564254 dbSNP
Location	chr:12,40808698
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11564134	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564154	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564174	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564186	1.00[CEU][hapmap]
rs11564188	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564208	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564257	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1427262	0.82[YRI][hapmap]
rs17128169	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17128172	1.00[CEU][hapmap]
rs17128396	1.00[CEU][hapmap]
rs17519531	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17519580	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17521316	1.00[CEU][hapmap]
rs28365208	1.00[CEU][hapmap]
rs73094944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73101527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102773	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106320	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106342	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106345	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106346	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106349	1.00[AMR][1000 genomes]
rs73106357	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108336	1.00[AFR][1000 genomes]
rs73108342	1.00[AMR][1000 genomes]
rs73108345	1.00[AMR][1000 genomes]
rs73108347	1.00[AMR][1000 genomes]
rs73108352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73114293	1.00[AMR][1000 genomes]
rs73117528	1.00[AMR][1000 genomes]
rs7315719	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7315853	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7974320	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9668092	1.00[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
MUC19	Proximal transcriptional regulation
ENSG00000258167	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)