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rVarBase
SNP Report
Basic Infomation
Name
rs17128396  
dbSNP
Location
chr:12,40912212
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11564134
1.00[CEU][hapmap]
rs11564174
1.00[CEU][hapmap]
rs11564254
1.00[CEU][hapmap]
rs11564257
1.00[CEU][hapmap]
rs17128169
1.00[CEU][hapmap]
rs17128172
1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17521316
1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7134318
1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73116213
1.00[EUR][1000 genomes]
rs73116220
1.00[EUR][1000 genomes]
rs73117999
1.00[EUR][1000 genomes]
rs73119906
0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9668092
1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
MUC19
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
BLOC1S3
SCAN