SNP Report
Basic Infomation
| Name | rs11564136 dbSNP |
|---|---|
| Location | chr:12,40549690 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11564134 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs11564154 | 1.00[CEU][hapmap] |
| rs11564163 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs11564174 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs11564186 | 1.00[CEU][hapmap] |
| rs11564188 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs11564208 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17519173 | 1.00[CEU][hapmap] |
| rs17519531 | 1.00[CEU][hapmap];0.83[YRI][hapmap] |
| rs17519580 | 1.00[CEU][hapmap] |
| rs2254475 | 1.00[CEU][hapmap] |
| rs28365208 | 1.00[CEU][hapmap] |
| rs28370698 | 1.00[CEU][hapmap] |
| rs73092794 | 0.94[AFR][1000 genomes] |
| rs73092800 | 0.94[AFR][1000 genomes] |
| rs73105433 | 0.88[AFR][1000 genomes] |
| rs73105478 | 1.00[AFR][1000 genomes] |
| rs73105482 | 1.00[AFR][1000 genomes] |
| rs73107664 | 1.00[AFR][1000 genomes] |
| rs7315719 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs7315853 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs7316047 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs7974320 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000223914 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014