SNP Report

Basic Infomation

Name	rs11177109 dbSNP
Location	chr:12,40932979
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10431578	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11177106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11177162	0.85[EUR][1000 genomes]
rs11177169	0.85[EUR][1000 genomes]
rs11177179	0.93[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs11177184	0.85[EUR][1000 genomes]
rs11177260	0.83[EUR][1000 genomes]
rs11561483	0.83[EUR][1000 genomes]
rs11832449	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs11838212	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs12231675	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12231820	0.84[EUR][1000 genomes]
rs1463738	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2204681	0.84[JPT][hapmap]
rs3751167	0.85[EUR][1000 genomes]
rs3751168	0.84[EUR][1000 genomes]
rs3751175	0.85[EUR][1000 genomes]
rs3829294	0.93[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs5002282	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs66485183	0.85[EUR][1000 genomes]
rs66518640	0.85[EUR][1000 genomes]
rs7133098	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7304329	0.81[ASW][hapmap];0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap]
rs73116213	0.87[AFR][1000 genomes]
rs73116220	0.88[AFR][1000 genomes]
rs73117999	0.88[AFR][1000 genomes]
rs73119915	0.88[AFR][1000 genomes]
rs73269994	0.84[EUR][1000 genomes]
rs73271812	0.85[EUR][1000 genomes]
rs8181694	0.83[EUR][1000 genomes]
rs9668092	0.90[YRI][hapmap];0.88[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
MUC19	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)