SNP Report
Basic Infomation
| Name | rs7720230 dbSNP |
|---|---|
| Location | chr:5,131592405 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10058655 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10075459 | 0.81[CEU][hapmap] |
| rs10478998 | 0.82[CEU][hapmap] |
| rs10479000 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10479001 | 0.86[MKK][hapmap];0.83[YRI][hapmap] |
| rs10520127 | 1.00[CHD][hapmap] |
| rs11242109 | 0.80[EUR][1000 genomes] |
| rs11950562 | 0.85[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs11955347 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs13357280 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17516457 | 0.82[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs17622208 | 0.85[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap] |
| rs2069614 | 0.81[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap] |
| rs2069616 | 0.81[CEU][hapmap] |
| rs2089855 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2278398 | 0.81[CEU][hapmap] |
| rs2631360 | 0.85[CEU][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap] |
| rs3091338 | 0.85[CEU][hapmap];0.90[GIH][hapmap] |
| rs3749756 | 0.81[CEU][hapmap] |
| rs3792894 | 0.81[CEU][hapmap] |
| rs3805681 | 0.81[CEU][hapmap] |
| rs3805683 | 0.81[CEU][hapmap] |
| rs3844312 | 1.00[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs3864277 | 0.89[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap] |
| rs4361509 | 0.81[CEU][hapmap] |
| rs4594848 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4705849 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4705926 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4705928 | 0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4705938 | 0.84[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap] |
| rs6896703 | 0.81[CEU][hapmap] |
| rs715285 | 0.81[CEU][hapmap] |
| rs721121 | 0.80[CEU][hapmap] |
| rs72793278 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72793280 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72793283 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72795121 | 0.82[EUR][1000 genomes] |
| rs7701237 | 0.81[CEU][hapmap] |
| rs7701414 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7705189 | 0.96[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7735891 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7737937 | 0.89[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PDLIM4 | Proximal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| SLC22A4 | Distal transcriptional regulation |
| PDLIM4 | Distal transcriptional regulation |
| P4HA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014