SNP Report
Basic Infomation
| Name | rs3864277 dbSNP |
|---|---|
| Location | chr:5,131420249 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10040809 | 0.85[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.86[TSI][hapmap] |
| rs10058655 | 0.89[CEU][hapmap] |
| rs10075459 | 0.85[CEU][hapmap] |
| rs10478998 | 0.83[CEU][hapmap] |
| rs10520127 | 1.00[CHD][hapmap] |
| rs10900804 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11242103 | 0.82[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11955347 | 0.89[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap] |
| rs1469149 | 0.82[EUR][1000 genomes] |
| rs17132288 | 0.81[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap] |
| rs2069614 | 0.92[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs2069616 | 0.92[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs2069803 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2089855 | 0.89[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap] |
| rs2278398 | 0.85[CEU][hapmap];0.90[MEX][hapmap] |
| rs3091338 | 0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3749756 | 0.85[CEU][hapmap];0.85[MEX][hapmap] |
| rs3792894 | 0.85[CEU][hapmap];0.85[MEX][hapmap] |
| rs3805681 | 0.85[CEU][hapmap] |
| rs3805683 | 0.85[CEU][hapmap] |
| rs3844312 | 0.89[CEU][hapmap] |
| rs3852206 | 0.82[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4361509 | 0.85[CEU][hapmap];0.90[MEX][hapmap] |
| rs4594848 | 0.89[CEU][hapmap];0.90[GIH][hapmap] |
| rs4705915 | 0.88[CEU][hapmap] |
| rs4705916 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4705928 | 0.84[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap] |
| rs6896703 | 0.85[CEU][hapmap] |
| rs715285 | 0.85[CEU][hapmap];0.90[MEX][hapmap] |
| rs721121 | 0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs743564 | 0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7701237 | 0.85[CEU][hapmap] |
| rs7701414 | 0.88[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap] |
| rs7714191 | 0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap] |
| rs7720230 | 0.89[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap] |
| rs7721882 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000253067 | Distal transcriptional regulation |
| CSF2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014