SNP Report
Basic Infomation
| Name | rs10040809 dbSNP |
|---|---|
| Location | chr:5,131343017 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10074490 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10520127 | 1.00[CHD][hapmap] |
| rs10900804 | 0.81[EUR][1000 genomes] |
| rs11242103 | 0.82[CEU][hapmap] |
| rs17132288 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2069614 | 0.85[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap] |
| rs2069616 | 0.88[CEU][hapmap] |
| rs2069803 | 0.82[EUR][1000 genomes] |
| rs27437 | 0.91[GIH][hapmap] |
| rs3091338 | 0.89[CEU][hapmap];0.90[GIH][hapmap];0.88[TSI][hapmap] |
| rs3864277 | 0.85[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.86[TSI][hapmap] |
| rs4705908 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4705915 | 0.88[CEU][hapmap] |
| rs6596047 | 0.81[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs721121 | 0.84[CEU][hapmap] |
| rs743564 | 0.81[CEU][hapmap] |
| rs7714191 | 0.92[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000231585 | Proximal transcriptional regulation |
| ACSL6 | Distal transcriptional regulation |
| ENSG00000231585 | Distal transcriptional regulation |
| RAPGEF6 | Distal transcriptional regulation |
| FNIP1 | Distal transcriptional regulation |
| ENSG00000223548 | Distal transcriptional regulation |
| ACSL6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014