SNP Report
Basic Infomation
| Name | rs27437 dbSNP |
|---|---|
| Location | chr:5,131436961 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10040809 | 0.91[GIH][hapmap] |
| rs10075459 | 0.89[CEU][hapmap] |
| rs10478998 | 0.82[CEU][hapmap] |
| rs17132288 | 0.87[GIH][hapmap] |
| rs2278398 | 0.89[CEU][hapmap];0.84[TSI][hapmap] |
| rs2897096 | 0.80[EUR][1000 genomes] |
| rs3749756 | 0.89[CEU][hapmap];0.84[TSI][hapmap] |
| rs3792894 | 0.89[CEU][hapmap];0.84[TSI][hapmap] |
| rs3805681 | 0.88[CEU][hapmap] |
| rs3805683 | 0.88[CEU][hapmap] |
| rs4361509 | 0.89[CEU][hapmap];0.84[TSI][hapmap] |
| rs6896703 | 0.89[CEU][hapmap];0.84[TSI][hapmap] |
| rs715285 | 0.89[CEU][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs7701237 | 0.89[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PDLIM4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014