SNP Report
Basic Infomation
| Name | rs743564 dbSNP |
|---|---|
| Location | chr:5,131410879 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10040809 | 0.81[CEU][hapmap] |
| rs10900804 | 0.81[EUR][1000 genomes] |
| rs11242103 | 0.96[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs1469149 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17516457 | 0.92[CEU][hapmap] |
| rs2069614 | 0.81[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2069616 | 0.81[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs2069803 | 0.80[EUR][1000 genomes] |
| rs3091338 | 0.84[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs3852206 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3864277 | 0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4705916 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs721121 | 0.81[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs7714191 | 0.88[CEU][hapmap] |
| rs7721882 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000253067 | Proximal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| MIR3936 | Distal transcriptional regulation |
| CSF2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014