SNP Report

Basic Infomation

Name	rs3091338 dbSNP
Location	chr:5,131402738
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10040809	0.89[CEU][hapmap];0.90[GIH][hapmap];0.88[TSI][hapmap]
rs10058655	0.85[CEU][hapmap]
rs10074490	0.83[EUR][1000 genomes]
rs10075459	0.82[CEU][hapmap]
rs10900804	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11242103	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11955347	0.85[CEU][hapmap];0.90[GIH][hapmap]
rs1469149	0.81[EUR][1000 genomes]
rs17132288	0.85[CEU][hapmap];0.90[GIH][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs2069614	0.96[CEU][hapmap];0.90[GIH][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes]
rs2069616	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs2069803	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2089855	0.85[CEU][hapmap];0.90[GIH][hapmap]
rs2278398	0.82[CEU][hapmap];0.89[MEX][hapmap]
rs3749756	0.82[CEU][hapmap];0.84[MEX][hapmap]
rs3792894	0.82[CEU][hapmap];0.84[MEX][hapmap]
rs3805681	0.81[CEU][hapmap]
rs3805683	0.81[CEU][hapmap]
rs3844312	0.85[CEU][hapmap]
rs3852206	0.81[EUR][1000 genomes]
rs3864277	0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4361509	0.82[CEU][hapmap];0.89[MEX][hapmap]
rs4594848	0.85[CEU][hapmap];0.90[GIH][hapmap]
rs4705908	0.82[EUR][1000 genomes]
rs4705915	0.92[CEU][hapmap];0.82[AMR][1000 genomes]
rs4705916	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4705928	0.80[CEU][hapmap];0.90[GIH][hapmap]
rs6896703	0.82[CEU][hapmap]
rs715285	0.82[CEU][hapmap];0.89[MEX][hapmap]
rs721121	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs743564	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs7701237	0.82[CEU][hapmap]
rs7701414	0.85[CEU][hapmap];0.90[GIH][hapmap]
rs7714191	0.96[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs7720230	0.85[CEU][hapmap];0.90[GIH][hapmap]
rs7721882	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
RNA5SP192	Distal transcriptional regulation
ENSG00000235775	Distal transcriptional regulation
ENSG00000233006	Distal transcriptional regulation
MIR3936	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 8)

eQTL related gene	Source
GAB2	SCAN
HSPA4	seeQTL
P4HA2	seeQTL
SLC22A4	Pritchard
SLC22A5	Pritchard
ACSL6	SCAN
P4HA2	SCAN
C21orf128	SCAN