SNP Report

Basic Infomation

Name	rs17516457 dbSNP
Location	chr:5,131590387
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10058655	0.83[CEU][hapmap]
rs10478998	0.81[CEU][hapmap]
rs1050152	0.81[CEU][hapmap]
rs11242103	0.89[CEU][hapmap]
rs11739135	1.00[YRI][hapmap]
rs11746555	1.00[YRI][hapmap]
rs11748193	1.00[YRI][hapmap]
rs11951091	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs11955347	0.82[CEU][hapmap]
rs12515180	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs12521868	0.84[CEU][hapmap]
rs17622378	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs2089855	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2188962	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs35260072	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3844312	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs3852206	0.91[CEU][hapmap]
rs4594848	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs4705928	0.80[EUR][1000 genomes]
rs55722650	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs743564	0.92[CEU][hapmap]
rs7701414	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs7720230	0.82[CEU][hapmap];0.81[EUR][1000 genomes]

rSNP related genes

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)