SNP Report
Name | rs7735891   dbSNP |
---|---|
Location | chr:5,131597005 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10058655 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10075801 | 0.82[EUR][1000 genomes] |
rs10479000 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10479001 | 0.85[AFR][1000 genomes] |
rs11242109 | 0.85[EUR][1000 genomes] |
rs11950562 | 0.85[EUR][1000 genomes] |
rs11955347 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs13357124 | 0.85[AFR][1000 genomes] |
rs13357280 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2089855 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs3844312 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs4594848 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs4705849 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4705926 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4705928 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs4705938 | 0.81[EUR][1000 genomes] |
rs55722650 | 0.80[EUR][1000 genomes] |
rs72793278 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs72793280 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs72793283 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs72795121 | 0.86[EUR][1000 genomes] |
rs7701414 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs7705189 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7720230 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
PDLIM4 | Proximal transcriptional regulation |
P4HA2 | Distal transcriptional regulation |
PDLIM4 | Distal transcriptional regulation |
P4HA2 | RNA binding protein mediated regulation |
PDLIM4 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014