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rVarBase
SNP Report
Basic Infomation
Name
rs55722650  
dbSNP
Location
chr:5,131607300
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10479000
0.80[EUR][1000 genomes]
rs1050152
0.83[EUR][1000 genomes]
rs13357280
0.80[EUR][1000 genomes]
rs17516457
0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35260072
0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56399423
0.84[EUR][1000 genomes]
rs7735891
0.80[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
P4HA2
Distal transcriptional regulation
RAD50
Distal transcriptional regulation
IL5
Distal transcriptional regulation
PDLIM4
Distal transcriptional regulation
P4HA2
RNA binding protein mediated regulation
PDLIM4
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)