SNP Report
Basic Infomation
| Name | rs1050152 dbSNP |
|---|---|
| Location | chr:5,131676320 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11739135 | 1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes] |
| rs11741255 | 0.92[CEU][hapmap] |
| rs11746555 | 1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11748193 | 1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11950562 | 1.00[CHD][hapmap];0.85[GIH][hapmap];0.90[MEX][hapmap] |
| rs11951091 | 0.96[CEU][hapmap] |
| rs12515180 | 0.96[CEU][hapmap] |
| rs12517950 | 0.82[AMR][1000 genomes] |
| rs12521868 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap] |
| rs17516457 | 0.81[CEU][hapmap] |
| rs17622208 | 1.00[CHD][hapmap];0.85[GIH][hapmap];0.90[MEX][hapmap] |
| rs17622378 | 0.96[CEU][hapmap] |
| rs17622656 | 0.82[CEU][hapmap];0.90[MEX][hapmap] |
| rs2188962 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap] |
| rs2248116 | 0.88[CEU][hapmap];0.95[MEX][hapmap] |
| rs2522052 | 0.88[CEU][hapmap] |
| rs2522057 | 0.89[CEU][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs2631360 | 1.00[CHD][hapmap];0.85[GIH][hapmap];0.85[MEX][hapmap] |
| rs35260072 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4705938 | 1.00[CHD][hapmap];0.85[GIH][hapmap];0.90[MEX][hapmap] |
| rs4705950 | 0.89[CEU][hapmap] |
| rs55722650 | 0.83[EUR][1000 genomes] |
| rs56399423 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6866614 | 0.89[CEU][hapmap] |
| rs736801 | 0.81[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A4 | RNA binding protein mediated regulation |
| ENSG00000233006 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014