SNP Report
Basic Infomation
| Name | rs11950562 dbSNP |
|---|---|
| Location | chr:5,131652529 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10058655 | 0.85[CEU][hapmap] |
| rs10060615 | 0.89[EUR][1000 genomes] |
| rs10075801 | 0.95[EUR][1000 genomes] |
| rs10479000 | 0.85[EUR][1000 genomes] |
| rs1050152 | 1.00[CHD][hapmap];0.85[GIH][hapmap];0.90[MEX][hapmap] |
| rs11242109 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11739135 | 1.00[CHD][hapmap];0.81[GIH][hapmap];0.90[MEX][hapmap] |
| rs11746555 | 1.00[CHD][hapmap];0.81[GIH][hapmap];0.90[MEX][hapmap] |
| rs11748193 | 1.00[CHD][hapmap];0.81[GIH][hapmap];0.90[MEX][hapmap] |
| rs11955347 | 0.85[CEU][hapmap];0.81[GIH][hapmap];0.86[TSI][hapmap] |
| rs12521868 | 1.00[CHD][hapmap];0.84[MEX][hapmap] |
| rs13357280 | 0.85[EUR][1000 genomes] |
| rs17622208 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs200838 | 0.88[EUR][1000 genomes] |
| rs2089855 | 0.85[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs2188962 | 1.00[CHD][hapmap];0.84[MEX][hapmap] |
| rs2248116 | 0.84[MEX][hapmap] |
| rs2522057 | 0.84[MEX][hapmap] |
| rs2631360 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs2631367 | 0.87[EUR][1000 genomes] |
| rs3844312 | 0.85[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs4594848 | 0.85[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs4705849 | 0.82[EUR][1000 genomes] |
| rs4705926 | 0.82[EUR][1000 genomes] |
| rs4705928 | 0.84[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs4705938 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs6860806 | 0.89[MKK][hapmap] |
| rs72793278 | 0.82[EUR][1000 genomes] |
| rs72795121 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7701414 | 0.85[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs7705189 | 0.89[CEU][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs7720230 | 0.85[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs7735891 | 0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A4 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| ENSG00000253067 | Distal transcriptional regulation |
| SLC22A4 | RNA binding protein mediated regulation |
| ENSG00000233006 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014