SNP Report
Basic Infomation
| Name | rs2522057 dbSNP |
|---|---|
| Location | chr:5,131801947 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1050152 | 0.89[CEU][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs10900809 | 0.84[AMR][1000 genomes] |
| rs11242115 | 0.83[AMR][1000 genomes] |
| rs11739135 | 0.95[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes] |
| rs11741255 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11746555 | 0.95[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes] |
| rs11748193 | 0.95[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes] |
| rs11950562 | 0.84[MEX][hapmap] |
| rs11951091 | 0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12515180 | 0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12517950 | 0.86[AMR][1000 genomes] |
| rs12521868 | 0.92[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17622208 | 0.84[MEX][hapmap] |
| rs17622378 | 0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17622656 | 0.92[CEU][hapmap];0.95[MEX][hapmap];0.84[AMR][1000 genomes] |
| rs2188962 | 0.92[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2248116 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2522052 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2706336 | 1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2706396 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4705938 | 0.84[MEX][hapmap] |
| rs4705950 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6866614 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72797303 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72797306 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs736801 | 0.92[CEU][hapmap];0.84[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C5orf56 | Proximal transcriptional regulation |
| ENSG00000202533 | Proximal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| ENSG00000239642 | Distal transcriptional regulation |
| IL3 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| SEPT8 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| C5orf56 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014