SNP Report
Basic Infomation
| Name | rs10900809 dbSNP |
|---|---|
| Location | chr:5,131826322 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11242115 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11741255 | 0.86[AMR][1000 genomes] |
| rs11951091 | 0.83[AMR][1000 genomes] |
| rs12515180 | 0.83[AMR][1000 genomes] |
| rs12521868 | 0.83[AMR][1000 genomes] |
| rs17622378 | 0.83[AMR][1000 genomes] |
| rs17622656 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2188962 | 0.82[AMR][1000 genomes] |
| rs2248116 | 0.84[AMR][1000 genomes] |
| rs2522052 | 0.82[AMR][1000 genomes] |
| rs2522057 | 0.84[AMR][1000 genomes] |
| rs2706336 | 0.84[AMR][1000 genomes] |
| rs2706396 | 0.82[AMR][1000 genomes] |
| rs4705950 | 0.83[AMR][1000 genomes] |
| rs72797303 | 0.82[AMR][1000 genomes] |
| rs72797306 | 0.86[AMR][1000 genomes] |
| rs736801 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IRF1 | Proximal transcriptional regulation |
| HIST2H2BE | Distal transcriptional regulation |
| HIST2H2AC | Distal transcriptional regulation |
| SLC9A1 | Distal transcriptional regulation |
| CYR61 | Distal transcriptional regulation |
| VCL | Distal transcriptional regulation |
| SERPINH1 | Distal transcriptional regulation |
| NR4A1 | Distal transcriptional regulation |
| RAB31 | Distal transcriptional regulation |
| RPUSD3 | Distal transcriptional regulation |
| IQCJ-SCHIP1 | Distal transcriptional regulation |
| HIST1H2BC | Distal transcriptional regulation |
| HIST1H2AC | Distal transcriptional regulation |
| C5orf28 | Distal transcriptional regulation |
| ENSG00000249492 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| ENSG00000238160 | Distal transcriptional regulation |
| ENSG00000202533 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| DDX5 | Distal transcriptional regulation |
| CEP95 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014