SNP Report
Basic Infomation
| Name | rs17622656 dbSNP |
|---|---|
| Location | chr:5,131820997 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1050152 | 0.82[CEU][hapmap];0.90[MEX][hapmap] |
| rs10900809 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11242115 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11739135 | 0.90[MEX][hapmap] |
| rs11741255 | 0.87[CEU][hapmap];0.86[AMR][1000 genomes] |
| rs11746555 | 0.90[MEX][hapmap] |
| rs11748193 | 0.90[MEX][hapmap] |
| rs11951091 | 0.85[CEU][hapmap];0.83[AMR][1000 genomes] |
| rs12515180 | 0.84[CEU][hapmap];0.83[AMR][1000 genomes] |
| rs12521868 | 0.85[CEU][hapmap];0.95[MEX][hapmap];0.83[AMR][1000 genomes] |
| rs17622378 | 0.85[CEU][hapmap];0.83[AMR][1000 genomes] |
| rs2188962 | 0.85[CEU][hapmap];0.95[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs2248116 | 0.92[CEU][hapmap];0.95[MEX][hapmap];0.84[AMR][1000 genomes] |
| rs2522052 | 0.92[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs2522057 | 0.92[CEU][hapmap];0.95[MEX][hapmap];0.84[AMR][1000 genomes] |
| rs2706336 | 0.84[AMR][1000 genomes] |
| rs2706396 | 0.82[AMR][1000 genomes] |
| rs4705950 | 0.92[CEU][hapmap];0.83[AMR][1000 genomes] |
| rs6866614 | 0.92[CEU][hapmap] |
| rs72797303 | 0.82[AMR][1000 genomes] |
| rs72797306 | 0.86[AMR][1000 genomes] |
| rs736801 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C5orf56 | Distal transcriptional regulation |
| ENSG00000238160 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014