SNP Report
Basic Infomation
| Name | rs2188962 dbSNP |
|---|---|
| Location | chr:5,131770805 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1050152 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap] |
| rs10900809 | 0.82[AMR][1000 genomes] |
| rs11242115 | 0.81[AMR][1000 genomes] |
| rs11739135 | 1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs11741255 | 0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11746555 | 1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs11748193 | 1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs11950562 | 1.00[CHD][hapmap];0.84[MEX][hapmap] |
| rs11951091 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12515180 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12517950 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs12521868 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17516457 | 0.84[CEU][hapmap];1.00[YRI][hapmap] |
| rs17622208 | 1.00[CHD][hapmap];0.84[MEX][hapmap] |
| rs17622378 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17622656 | 0.85[CEU][hapmap];0.95[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs2248116 | 0.92[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2522052 | 0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2522057 | 0.92[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2631360 | 1.00[CHD][hapmap] |
| rs2706336 | 0.95[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2706396 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4705938 | 1.00[CHD][hapmap];0.84[MEX][hapmap] |
| rs4705950 | 0.92[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6866614 | 0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72797303 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72797306 | 0.96[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs736801 | 0.85[CEU][hapmap];0.82[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000238160 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| SEPT8 | Distal transcriptional regulation |
| IL3 | Distal transcriptional regulation |
| IL4 | Distal transcriptional regulation |
| C5orf56 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014