SNP Report
Basic Infomation
| Name | rs6687494 dbSNP |
|---|---|
| Location | chr:1,201193668 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10753896 | 0.84[CEU][hapmap];0.81[AMR][1000 genomes] |
| rs10753897 | 0.84[CEU][hapmap];0.94[GIH][hapmap];0.81[MKK][hapmap];0.81[AMR][1000 genomes] |
| rs10920109 | 1.00[ASN][1000 genomes] |
| rs10920111 | 1.00[ASN][1000 genomes] |
| rs10920113 | 1.00[ASN][1000 genomes] |
| rs10920144 | 0.83[AMR][1000 genomes] |
| rs10920158 | 1.00[ASN][1000 genomes] |
| rs11577079 | 1.00[ASN][1000 genomes] |
| rs11579279 | 1.00[ASN][1000 genomes] |
| rs12119957 | 1.00[ASN][1000 genomes] |
| rs12134361 | 0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12138260 | 1.00[ASN][1000 genomes] |
| rs12724643 | 1.00[ASN][1000 genomes] |
| rs12737797 | 1.00[ASN][1000 genomes] |
| rs12737822 | 1.00[ASN][1000 genomes] |
| rs12742169 | 1.00[ASN][1000 genomes] |
| rs12742170 | 1.00[ASN][1000 genomes] |
| rs12743065 | 1.00[ASN][1000 genomes] |
| rs12743376 | 1.00[ASN][1000 genomes] |
| rs2039959 | 1.00[ASW][hapmap];0.84[CEU][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.81[AMR][1000 genomes] |
| rs2365641 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35400505 | 1.00[ASN][1000 genomes] |
| rs35524696 | 0.85[AMR][1000 genomes] |
| rs3730237 | 1.00[ASN][1000 genomes] |
| rs3738268 | 1.00[ASW][hapmap];0.84[CEU][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.83[AMR][1000 genomes] |
| rs41267497 | 1.00[ASN][1000 genomes] |
| rs41267503 | 1.00[ASN][1000 genomes] |
| rs4396148 | 1.00[ASW][hapmap];0.84[CEU][hapmap];0.91[MEX][hapmap] |
| rs4915224 | 1.00[ASW][hapmap];0.84[CEU][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.81[AMR][1000 genomes] |
| rs4915497 | 0.84[CEU][hapmap];0.81[AMR][1000 genomes] |
| rs4915498 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4915503 | 1.00[ASW][hapmap] |
| rs6427885 | 0.81[AMR][1000 genomes] |
| rs6427889 | 0.83[AMR][1000 genomes] |
| rs6427890 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6667020 | 0.83[AMR][1000 genomes] |
| rs6687886 | 1.00[ASW][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs6692846 | 0.84[CEU][hapmap];0.81[AMR][1000 genomes] |
| rs71635533 | 1.00[ASN][1000 genomes] |
| rs7415038 | 1.00[ASN][1000 genomes] |
| rs832158 | 0.82[MEX][hapmap] |
| rs832159 | 0.82[MEX][hapmap] |
| rs940584 | 0.91[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9427712 | 1.00[ASN][1000 genomes] |
| rs9427713 | 1.00[ASN][1000 genomes] |
| rs9427714 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000229821 | Proximal transcriptional regulation |
| IGFN1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014