SNP Report
Basic Infomation
| Name | rs3738268 dbSNP |
|---|---|
| Location | chr:1,201187828 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10753896 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10753897 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10920144 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12134361 | 0.83[AMR][1000 genomes] |
| rs2039959 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35524696 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4396148 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4488061 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4915219 | 1.00[CHB][hapmap] |
| rs4915224 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4915497 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4915498 | 1.00[YRI][hapmap] |
| rs4915503 | 1.00[ASW][hapmap] |
| rs6427885 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6427886 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6427887 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6427889 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6427890 | 1.00[YRI][hapmap] |
| rs6667020 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6687494 | 1.00[ASW][hapmap];0.84[CEU][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.83[AMR][1000 genomes] |
| rs6687886 | 1.00[ASW][hapmap];1.00[YRI][hapmap] |
| rs6692846 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs832157 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs832158 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs832159 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs940584 | 0.83[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZBTB1 | Distal transcriptional regulation |
| ZBTB25 | Distal transcriptional regulation |
| TMEM9 | Distal transcriptional regulation |
| IGFN1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014