SNP Report
Basic Infomation
| Name | rs6687886 dbSNP |
|---|---|
| Location | chr:1,201241279 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920109 | 1.00[ASN][1000 genomes] |
| rs10920111 | 1.00[ASN][1000 genomes] |
| rs10920113 | 1.00[ASN][1000 genomes] |
| rs10920144 | 1.00[YRI][hapmap] |
| rs10920158 | 1.00[ASN][1000 genomes] |
| rs11577079 | 1.00[ASN][1000 genomes] |
| rs12134361 | 0.86[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12724643 | 1.00[ASN][1000 genomes] |
| rs12737797 | 1.00[ASN][1000 genomes] |
| rs12737822 | 1.00[ASN][1000 genomes] |
| rs12742169 | 1.00[ASN][1000 genomes] |
| rs12742170 | 1.00[ASN][1000 genomes] |
| rs12743065 | 1.00[ASN][1000 genomes] |
| rs12743376 | 1.00[ASN][1000 genomes] |
| rs2039959 | 1.00[ASW][hapmap] |
| rs2365641 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35400505 | 1.00[ASN][1000 genomes] |
| rs3730237 | 1.00[ASN][1000 genomes] |
| rs3738268 | 1.00[ASW][hapmap];1.00[YRI][hapmap] |
| rs4396148 | 1.00[ASW][hapmap];1.00[YRI][hapmap] |
| rs4915224 | 1.00[ASW][hapmap] |
| rs4915497 | 1.00[YRI][hapmap] |
| rs4915498 | 1.00[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4915503 | 1.00[ASW][hapmap] |
| rs6427890 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6687494 | 1.00[ASW][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs71635533 | 1.00[ASN][1000 genomes] |
| rs940584 | 0.81[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LAD1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014