SNP Report
Basic Infomation
| Name | rs12742170 dbSNP |
|---|---|
| Location | chr:1,201052312 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920075 | 1.00[CHD][hapmap] |
| rs10920109 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10920111 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10920112 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10920113 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10920158 | 1.00[ASN][1000 genomes] |
| rs11577079 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11579279 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11585193 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12119957 | 1.00[CHD][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12131939 | 1.00[CHD][hapmap] |
| rs12134361 | 1.00[ASN][1000 genomes] |
| rs12138260 | 1.00[ASN][1000 genomes] |
| rs12724643 | 0.84[ASW][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12737797 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12737822 | 1.00[CHD][hapmap];0.85[GIH][hapmap];0.84[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12742169 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12743065 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12743376 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2365641 | 1.00[ASN][1000 genomes] |
| rs35303915 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs35400505 | 1.00[ASN][1000 genomes] |
| rs41267497 | 1.00[ASN][1000 genomes] |
| rs41267503 | 1.00[ASN][1000 genomes] |
| rs4915498 | 1.00[ASN][1000 genomes] |
| rs6427890 | 1.00[ASN][1000 genomes] |
| rs6687494 | 1.00[ASN][1000 genomes] |
| rs6687886 | 1.00[ASN][1000 genomes] |
| rs71635533 | 1.00[ASN][1000 genomes] |
| rs72749142 | 1.00[ASN][1000 genomes] |
| rs7415038 | 1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
| rs906316 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs940584 | 1.00[ASN][1000 genomes] |
| rs9427712 | 0.85[GIH][hapmap];0.81[MEX][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9427713 | 0.84[ASW][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9427714 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CACNA1S | Distal transcriptional regulation |
| ASCL5 | Distal transcriptional regulation |
| CACNA1S | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014