SNP Report
Basic Infomation
| Name | rs906316 dbSNP |
|---|---|
| Location | chr:1,201045525 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920109 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10920111 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10920112 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10920113 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11577079 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11579279 | 0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11585193 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12119957 | 0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12724643 | 0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12737797 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12737822 | 0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12742169 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12742170 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12743065 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12743376 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs35303915 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4915478 | 1.00[ASN][1000 genomes] |
| rs9427712 | 0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9427713 | 0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9427714 | 0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CACNA1S | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014