SNP Report

Basic Infomation

Name	rs9427712 dbSNP
Location	chr:1,201041198
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10920109	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10920111	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10920112	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10920113	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10920158	1.00[ASN][1000 genomes]
rs11577079	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11579279	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585193	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12119957	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12134361	1.00[ASN][1000 genomes]
rs12138260	1.00[ASN][1000 genomes]
rs12724643	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737797	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737822	1.00[CEU][hapmap];0.90[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12742169	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12742170	0.85[GIH][hapmap];0.81[MEX][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743065	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743376	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2365641	1.00[ASN][1000 genomes]
rs35303915	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35400505	1.00[ASN][1000 genomes]
rs41267497	1.00[ASN][1000 genomes]
rs41267503	1.00[ASN][1000 genomes]
rs4915498	1.00[ASN][1000 genomes]
rs6427890	1.00[ASN][1000 genomes]
rs6687494	1.00[ASN][1000 genomes]
rs71635533	1.00[ASN][1000 genomes]
rs72749142	1.00[ASN][1000 genomes]
rs734881	0.81[CEU][hapmap]
rs7415038	1.00[ASN][1000 genomes]
rs906316	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs940584	1.00[ASN][1000 genomes]
rs9427713	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9427714	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CACNA1S	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)