SNP Report
Basic Infomation
| Name | rs734881 dbSNP |
|---|---|
| Location | chr:1,201050284 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920106 | 0.92[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs11579279 | 0.82[CEU][hapmap] |
| rs11811602 | 0.87[CHB][hapmap] |
| rs12119957 | 0.81[CEU][hapmap] |
| rs12724643 | 0.81[CEU][hapmap] |
| rs12737822 | 0.81[CEU][hapmap] |
| rs2296386 | 0.84[CHB][hapmap] |
| rs3767506 | 0.93[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs3767507 | 0.93[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs3767512 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs3820422 | 0.84[CHB][hapmap] |
| rs4915477 | 0.92[CHB][hapmap] |
| rs56236174 | 0.94[ASN][1000 genomes] |
| rs57511066 | 0.94[ASN][1000 genomes] |
| rs6664806 | 0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6667959 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs734879 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes] |
| rs734880 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7516825 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7539618 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes] |
| rs942705 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs942706 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes] |
| rs9427712 | 0.81[CEU][hapmap] |
| rs9427713 | 0.80[CEU][hapmap] |
| rs9427714 | 0.81[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CACNA1S | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014