SNP Report
Basic Infomation
| Name | rs3820422 dbSNP |
|---|---|
| Location | chr:1,201045473 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920106 | 0.93[CHB][hapmap] |
| rs10920107 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11811602 | 0.80[CEU][hapmap];0.93[CHB][hapmap];0.93[ASN][1000 genomes] |
| rs12026017 | 0.90[ASN][1000 genomes] |
| rs2296386 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3767506 | 0.93[CHB][hapmap] |
| rs3767507 | 0.93[CHB][hapmap] |
| rs4915477 | 0.93[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes] |
| rs6667959 | 0.86[CHB][hapmap] |
| rs734879 | 0.86[CHB][hapmap] |
| rs734881 | 0.84[CHB][hapmap] |
| rs7539618 | 0.86[CHB][hapmap] |
| rs942705 | 0.85[CHB][hapmap] |
| rs942706 | 0.86[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CACNA1S | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014