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rVarBase
SNP Report
Basic Infomation
Name
rs56236174  
dbSNP
Location
chr:1,201051420
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10920106
0.82[ASN][1000 genomes]
rs3767506
0.84[ASN][1000 genomes]
rs3767507
0.84[ASN][1000 genomes]
rs3767512
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57511066
0.96[ASN][1000 genomes]
rs6664806
0.91[ASN][1000 genomes]
rs6667959
0.96[ASN][1000 genomes]
rs734879
0.96[ASN][1000 genomes]
rs734880
0.94[ASN][1000 genomes]
rs734881
0.94[ASN][1000 genomes]
rs7516825
0.95[ASN][1000 genomes]
rs7539618
0.96[ASN][1000 genomes]
rs942705
0.93[ASN][1000 genomes]
rs942706
0.96[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
CACNA1S
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)