SNP Report
Basic Infomation
| Name | rs6427889 dbSNP |
|---|---|
| Location | chr:1,201192647 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10753896 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10753897 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10920144 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12134361 | 0.83[AMR][1000 genomes] |
| rs2039959 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs35524696 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3738268 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4396148 | 0.87[AMR][1000 genomes] |
| rs4488061 | 0.87[AMR][1000 genomes] |
| rs4915224 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4915497 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6427885 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6427886 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6427887 | 0.92[AMR][1000 genomes] |
| rs6667020 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6687494 | 0.83[AMR][1000 genomes] |
| rs6692846 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs940584 | 0.83[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000229821 | Proximal transcriptional regulation |
| ASCL5 | Distal transcriptional regulation |
| TMEM9 | Distal transcriptional regulation |
| IGFN1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014