SNP Report

Basic Infomation

Name	rs62398107 dbSNP
Location	chr:6,20875812
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 42)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11967047	0.91[ASN][1000 genomes]
rs11967068	0.91[ASN][1000 genomes]
rs12662218	0.90[EUR][1000 genomes]
rs12663147	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12665734	0.88[ASN][1000 genomes]
rs16884229	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16901585	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4077403	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5007237	0.97[ASN][1000 genomes]
rs55738226	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55805308	0.91[EUR][1000 genomes]
rs56027426	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56080233	0.90[EUR][1000 genomes]
rs56091419	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56883837	0.90[EUR][1000 genomes]
rs60568948	0.90[ASN][1000 genomes]
rs62398106	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62398108	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62398111	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6914232	0.90[EUR][1000 genomes]
rs6920045	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6941508	0.92[ASN][1000 genomes]
rs72832348	0.82[ASN][1000 genomes]
rs72832359	0.87[ASN][1000 genomes]
rs72832371	0.94[ASN][1000 genomes]
rs72832373	0.92[ASN][1000 genomes]
rs72832379	0.91[ASN][1000 genomes]
rs72832380	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72832387	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72834304	0.88[EUR][1000 genomes]
rs7739013	0.93[EUR][1000 genomes]
rs7740094	0.91[EUR][1000 genomes]
rs7742468	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7751431	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7753271	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7765060	0.91[ASN][1000 genomes]
rs7765765	0.90[EUR][1000 genomes]
rs9350291	0.91[ASN][1000 genomes]
rs9350292	0.91[ASN][1000 genomes]
rs9356757	0.98[ASN][1000 genomes]
rs9366363	0.96[ASN][1000 genomes]
rs9465914	0.92[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SOX4	Distal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)