SNP Report

Basic Infomation

Name	rs4077403 dbSNP
Location	chr:6,20876510
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 52)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11967047	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs11967068	0.91[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs12662218	1.00[CEU][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs12663147	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12664021	0.95[CHB][hapmap]
rs12665734	0.88[ASN][1000 genomes]
rs16884229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16901585	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2473651	0.95[CHB][hapmap];0.95[CHD][hapmap]
rs2493995	0.95[CHB][hapmap]
rs2745930	0.95[CHB][hapmap]
rs2819996	0.95[CHB][hapmap];0.95[CHD][hapmap]
rs2819998	0.95[CHB][hapmap]
rs2820001	0.95[CHB][hapmap];0.95[CHD][hapmap]
rs4493738	0.95[CHB][hapmap]
rs5007237	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs55738226	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55805308	0.82[EUR][1000 genomes]
rs56027426	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56080233	0.81[EUR][1000 genomes]
rs56091419	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56883837	0.81[EUR][1000 genomes]
rs60568948	0.90[ASN][1000 genomes]
rs62398106	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62398107	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62398108	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62398111	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6456382	0.81[CEU][hapmap]
rs6909558	0.95[CHB][hapmap]
rs6914232	0.81[EUR][1000 genomes]
rs6920045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6941508	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs72832348	0.82[ASN][1000 genomes]
rs72832359	0.87[ASN][1000 genomes]
rs72832371	0.94[ASN][1000 genomes]
rs72832373	0.92[ASN][1000 genomes]
rs72832379	0.91[ASN][1000 genomes]
rs72832380	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72832387	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7452218	0.95[CHB][hapmap]
rs7739013	0.84[EUR][1000 genomes]
rs7740094	0.82[EUR][1000 genomes]
rs7742468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7751431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7753271	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7765060	0.91[ASN][1000 genomes]
rs7765765	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9350291	0.91[ASN][1000 genomes]
rs9350292	0.91[ASN][1000 genomes]
rs9356757	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9366363	0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9465914	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SOX4	Distal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)