SNP Report

Basic Infomation

Name	rs6909558 dbSNP
Location	chr:6,20760177
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 52)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11967047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11967068	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12663147	0.95[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs12664021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12665734	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16884229	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs16901585	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs2473651	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2493995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[ASN][1000 genomes]
rs2745930	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[ASN][1000 genomes]
rs2745931	0.98[ASN][1000 genomes]
rs2819994	0.98[ASN][1000 genomes]
rs2819996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[ASN][1000 genomes]
rs2819998	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs2820001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[ASN][1000 genomes]
rs4077403	0.95[CHB][hapmap]
rs4493738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5007237	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs55987458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56017320	0.86[ASN][1000 genomes]
rs56251119	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57087943	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59840719	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60568948	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60893008	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920045	0.95[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs6941508	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs72832313	0.86[ASN][1000 genomes]
rs72832315	0.85[ASN][1000 genomes]
rs72832323	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832325	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72832326	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832333	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832335	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72832338	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72832344	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72832348	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72832359	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72832371	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72832373	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72832379	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72832380	0.81[ASN][1000 genomes]
rs73732780	0.84[AFR][1000 genomes]
rs7452218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742468	0.95[CHB][hapmap]
rs7751431	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs7753271	0.95[CHB][hapmap]
rs7765060	0.83[ASN][1000 genomes]
rs9356757	0.95[CHB][hapmap]
rs9366363	0.90[CHB][hapmap]
rs9465914	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs9688471	0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000233848	RNA binding protein mediated regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)