SNP Report

Basic Infomation

Name	rs12662218 dbSNP
Location	chr:6,20922728
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12524678	0.92[JPT][hapmap]
rs12663147	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16884229	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs16884310	0.86[JPT][hapmap]
rs16901585	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4077403	1.00[CEU][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs4144650	0.92[CHD][hapmap];0.92[JPT][hapmap]
rs55738226	0.89[EUR][1000 genomes]
rs55805308	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56027426	0.89[EUR][1000 genomes]
rs56080233	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56091419	0.90[EUR][1000 genomes]
rs56883837	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62398106	0.89[EUR][1000 genomes]
rs62398107	0.90[EUR][1000 genomes]
rs62398108	0.90[EUR][1000 genomes]
rs62398111	0.97[EUR][1000 genomes]
rs6456381	0.82[CHB][hapmap]
rs6456382	0.81[CEU][hapmap];0.83[CHB][hapmap];0.81[TSI][hapmap]
rs6914232	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6920045	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs72832380	0.81[EUR][1000 genomes]
rs72832387	0.89[EUR][1000 genomes]
rs72834304	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72834308	0.97[ASN][1000 genomes]
rs7739013	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7740094	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7742468	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7751431	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7753271	1.00[CEU][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs7765765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)