SNP Report
Basic Infomation
| Name | rs72834304 dbSNP |
|---|---|
| Location | chr:6,20913389 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12662218 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs16884229 | 0.88[EUR][1000 genomes] |
| rs16901585 | 0.81[EUR][1000 genomes] |
| rs55738226 | 0.88[EUR][1000 genomes] |
| rs55805308 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs56027426 | 0.87[EUR][1000 genomes] |
| rs56080233 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs56091419 | 0.88[EUR][1000 genomes] |
| rs56883837 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs62398106 | 0.88[EUR][1000 genomes] |
| rs62398107 | 0.88[EUR][1000 genomes] |
| rs62398108 | 0.88[EUR][1000 genomes] |
| rs62398111 | 0.95[EUR][1000 genomes] |
| rs6914232 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72832387 | 0.88[EUR][1000 genomes] |
| rs72834308 | 0.91[ASN][1000 genomes] |
| rs7739013 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7740094 | 0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7742468 | 0.80[EUR][1000 genomes] |
| rs7765765 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014