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rVarBase
SNP Report
Basic Infomation
Name
rs6456381  
dbSNP
Location
chr:6,20901232
Allele
A/T
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12154181
0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12662218
0.82[CHB][hapmap]
rs4712556
0.81[CEU][hapmap]
rs6456382
1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7765765
0.83[CHB][hapmap]
rs9358376
0.81[CEU][hapmap]
rs9368246
0.81[CEU][hapmap]
rSNP related genes
Symbol
Regulation type
CDKAL1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)