SNP Report
Basic Infomation
| Name | rs9358376 dbSNP |
|---|---|
| Location | chr:6,20898249 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs4712556 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4712558 | 0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs5007237 | 0.81[CEU][hapmap] |
| rs6456381 | 0.81[CEU][hapmap] |
| rs6456382 | 0.89[GIH][hapmap] |
| rs6941508 | 0.81[CEU][hapmap] |
| rs7738382 | 0.91[CHB][hapmap] |
| rs7759877 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9350288 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9366363 | 0.81[CEU][hapmap];0.81[TSI][hapmap] |
| rs9368244 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9368246 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9465915 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| C1orf115 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014