SNP Report
Basic Infomation
| Name | rs6122161 dbSNP |
|---|---|
| Location | chr:20,62386887 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1058319 | 0.83[CHB][hapmap] |
| rs1151624 | 0.83[CHB][hapmap] |
| rs12053646 | 0.81[ASN][1000 genomes] |
| rs12625387 | 0.91[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12625413 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1741708 | 0.83[CHB][hapmap] |
| rs1887406 | 0.82[ASN][1000 genomes] |
| rs2093118 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2253823 | 0.83[CHB][hapmap] |
| rs2281927 | 0.98[ASN][1000 genomes] |
| rs2281928 | 0.98[ASN][1000 genomes] |
| rs2315646 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2315648 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2872979 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4809222 | 0.82[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4809332 | 0.94[ASN][1000 genomes] |
| rs4809335 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs5019252 | 0.91[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6011076 | 0.86[GIH][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs6089970 | 0.84[CHD][hapmap] |
| rs6089973 | 0.98[ASN][1000 genomes] |
| rs6122028 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6122159 | 0.82[CHB][hapmap] |
| rs6122160 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs932824 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs932825 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A4RG | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014