SNP Report
Basic Infomation
| Name | rs1887406 dbSNP |
|---|---|
| Location | chr:20,62379990 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1151622 | 0.81[AMR][1000 genomes] |
| rs1151624 | 0.81[AMR][1000 genomes] |
| rs11696871 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12053646 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12481497 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12625413 | 0.85[ASN][1000 genomes] |
| rs13041528 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2093118 | 0.80[ASN][1000 genomes] |
| rs2236510 | 0.81[AMR][1000 genomes] |
| rs2256814 | 0.84[AMR][1000 genomes] |
| rs2281926 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2281927 | 0.83[ASN][1000 genomes] |
| rs2281928 | 0.83[ASN][1000 genomes] |
| rs2315646 | 0.85[ASN][1000 genomes] |
| rs2315648 | 0.85[ASN][1000 genomes] |
| rs2427533 | 0.81[AMR][1000 genomes] |
| rs2427534 | 0.81[AMR][1000 genomes] |
| rs2872979 | 0.85[ASN][1000 genomes] |
| rs4809222 | 0.85[ASN][1000 genomes] |
| rs4809332 | 0.86[ASN][1000 genomes] |
| rs4809334 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4809335 | 0.83[ASN][1000 genomes] |
| rs6089970 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6089971 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6089973 | 0.82[ASN][1000 genomes] |
| rs6122160 | 0.82[ASN][1000 genomes] |
| rs6122161 | 0.82[ASN][1000 genomes] |
| rs73622886 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs73622887 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs914559 | 0.81[AMR][1000 genomes] |
| rs932824 | 0.85[ASN][1000 genomes] |
| rs932825 | 0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARFRP1 | Distal transcriptional regulation |
| TNFRSF6B | Distal transcriptional regulation |
| RTEL1 | Distal transcriptional regulation |
| RTEL1-TNFRSF6B | Distal transcriptional regulation |
| ZGPAT | Distal transcriptional regulation |
| ENSG00000268858 | Distal transcriptional regulation |
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014