SNP Report
Basic Infomation
| Name | rs11696871 dbSNP |
|---|---|
| Location | chr:20,62387417 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1151622 | 1.00[ASW][hapmap];0.93[MEX][hapmap];0.81[AMR][1000 genomes] |
| rs1151624 | 1.00[ASW][hapmap];0.87[MEX][hapmap];0.81[AMR][1000 genomes] |
| rs12053646 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12481497 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13041528 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1741708 | 1.00[ASW][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap] |
| rs1887406 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2236508 | 1.00[ASW][hapmap];0.81[MEX][hapmap] |
| rs2236510 | 0.81[AMR][1000 genomes] |
| rs2253823 | 1.00[ASW][hapmap];0.93[MEX][hapmap];1.00[YRI][hapmap] |
| rs2256814 | 0.84[AMR][1000 genomes] |
| rs2257885 | 1.00[ASW][hapmap];0.81[MEX][hapmap] |
| rs2281926 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2297441 | 1.00[ASW][hapmap];0.81[MEX][hapmap] |
| rs2315654 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap] |
| rs2427530 | 0.82[ASW][hapmap];0.81[MEX][hapmap] |
| rs2427533 | 1.00[ASW][hapmap];0.93[MEX][hapmap];0.81[AMR][1000 genomes] |
| rs2427534 | 0.81[AMR][1000 genomes] |
| rs2738758 | 0.82[ASW][hapmap];0.81[MEX][hapmap] |
| rs4809334 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6010648 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap] |
| rs6011097 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs6011098 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs6089970 | 1.00[ASW][hapmap];0.95[GIH][hapmap];0.93[MEX][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs6089971 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6089982 | 0.81[CHB][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap] |
| rs6122159 | 1.00[ASW][hapmap];0.93[MEX][hapmap] |
| rs73622886 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs73622887 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs914559 | 0.81[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014