SNP Report
Basic Infomation
| Name | rs2315654 dbSNP |
|---|---|
| Location | chr:20,62399641 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696871 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap] |
| rs12480190 | 0.80[ASN][1000 genomes] |
| rs12481497 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs13041528 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap] |
| rs2427530 | 0.88[MEX][hapmap] |
| rs2738758 | 0.88[MEX][hapmap] |
| rs4809334 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs6010648 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6011097 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6011098 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6089970 | 0.89[GIH][hapmap] |
| rs6089982 | 0.81[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs6512287 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LIME1 | Distal transcriptional regulation |
| SLC2A4RG | Distal transcriptional regulation |
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| RTEL1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014