SNP Report
Basic Infomation
| Name | rs6089982 dbSNP |
|---|---|
| Location | chr:20,62401143 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1151622 | 0.86[MEX][hapmap] |
| rs1151624 | 0.80[MEX][hapmap] |
| rs11696871 | 0.81[CHB][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap] |
| rs12480190 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12481497 | 0.81[CHB][hapmap];0.86[JPT][hapmap] |
| rs13041528 | 0.81[CHB][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap] |
| rs1741708 | 1.00[YRI][hapmap] |
| rs2253823 | 0.86[MEX][hapmap];1.00[YRI][hapmap] |
| rs2315654 | 0.81[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs2427533 | 0.86[MEX][hapmap] |
| rs4809334 | 0.81[CHB][hapmap];0.86[JPT][hapmap] |
| rs6010648 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
| rs6011097 | 0.81[CHB][hapmap];0.95[JPT][hapmap] |
| rs6011098 | 0.81[CHB][hapmap];0.95[JPT][hapmap] |
| rs6089970 | 0.86[MEX][hapmap] |
| rs6122159 | 0.86[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LIME1 | Distal transcriptional regulation |
| SLC2A4RG | Distal transcriptional regulation |
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014