SNP Report
Basic Infomation
| Name | rs6010648 dbSNP |
|---|---|
| Location | chr:20,62400021 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1058319 | 1.00[YRI][hapmap] |
| rs1151622 | 1.00[YRI][hapmap] |
| rs1151624 | 1.00[YRI][hapmap] |
| rs11696871 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap] |
| rs12481497 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap] |
| rs1291206 | 1.00[YRI][hapmap] |
| rs13041528 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap] |
| rs1741708 | 1.00[YRI][hapmap] |
| rs1758205 | 1.00[YRI][hapmap] |
| rs2236508 | 1.00[YRI][hapmap] |
| rs2253823 | 1.00[YRI][hapmap] |
| rs2297441 | 1.00[YRI][hapmap] |
| rs2315654 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2427530 | 1.00[YRI][hapmap] |
| rs2427533 | 1.00[YRI][hapmap] |
| rs2738758 | 1.00[YRI][hapmap] |
| rs3208008 | 1.00[YRI][hapmap] |
| rs4809334 | 0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap] |
| rs6010675 | 1.00[YRI][hapmap] |
| rs6011097 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6011098 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6089970 | 1.00[YRI][hapmap] |
| rs6089982 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
| rs6122154 | 1.00[YRI][hapmap] |
| rs6512287 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LIME1 | Distal transcriptional regulation |
| SLC2A4RG | Distal transcriptional regulation |
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014