SNP Report

Basic Infomation

Name	rs1291206 dbSNP
Location	chr:20,62329169
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 67)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1048665	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1058319	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs1151622	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1151623	0.84[EUR][1000 genomes]
rs1151624	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1291205	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1291207	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1291209	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1291210	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1291213	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1295810	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1623866	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1741708	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1758205	0.95[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2236508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2236510	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2253823	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2253829	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2256814	0.87[AFR][1000 genomes]
rs2257437	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2257440	0.86[CHB][hapmap];0.91[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2257885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2258056	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2259858	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2263805	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2263806	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2297441	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2315007	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2315008	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2315009	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2427529	0.84[EUR][1000 genomes]
rs2427530	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs2427531	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2427532	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2427533	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2427534	0.85[EUR][1000 genomes]
rs2738758	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2750480	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2750481	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2750482	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2750483	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2872881	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3208008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34251386	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35201382	0.89[EUR][1000 genomes]
rs4809330	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs6010648	1.00[YRI][hapmap]
rs6010675	1.00[YRI][hapmap]
rs6011040	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6011058	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs6011066	0.85[CHB][hapmap]
rs6062497	0.89[ASN][1000 genomes]
rs6062498	0.80[ASN][1000 genomes]
rs6062504	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs6062509	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs6089961	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6089970	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs6122154	0.95[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6122157	0.87[AFR][1000 genomes]
rs6122158	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6122159	0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs67468102	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67616625	0.85[EUR][1000 genomes]
rs71325463	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs8957	0.83[CHB][hapmap]
rs909341	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs914559	0.85[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
EEF1A1	Distal transcriptional regulation
PTK6	Distal transcriptional regulation
STMN3	Distal transcriptional regulation
LIME1	Distal transcriptional regulation
SLC2A4RG	Distal transcriptional regulation
ENSG00000229299	Distal transcriptional regulation
TPD52L2	Distal transcriptional regulation
ENSG00000270047	Distal transcriptional regulation
HIST2H2BE	Distal transcriptional regulation
HIST2H2AC	Distal transcriptional regulation
ZGPAT	Distal transcriptional regulation
RTEL1-TNFRSF6B	RNA binding protein mediated regulation
TNFRSF6B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)