SNP Report
Basic Infomation
| Name | rs6010675 dbSNP |
|---|---|
| Location | chr:20,62468726 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1058319 | 1.00[YRI][hapmap] |
| rs11086130 | 1.00[CEU][hapmap] |
| rs1151622 | 1.00[YRI][hapmap] |
| rs1151624 | 1.00[YRI][hapmap] |
| rs11697094 | 0.91[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs11697746 | 0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11698493 | 0.88[CEU][hapmap] |
| rs12479805 | 1.00[CEU][hapmap] |
| rs1291206 | 1.00[YRI][hapmap] |
| rs1741708 | 1.00[YRI][hapmap] |
| rs1758205 | 1.00[YRI][hapmap] |
| rs2236508 | 1.00[YRI][hapmap] |
| rs2253823 | 1.00[YRI][hapmap] |
| rs2297441 | 1.00[YRI][hapmap] |
| rs2427530 | 1.00[YRI][hapmap] |
| rs2427533 | 1.00[YRI][hapmap] |
| rs2738758 | 1.00[YRI][hapmap] |
| rs3208008 | 1.00[YRI][hapmap] |
| rs4809238 | 0.88[CEU][hapmap] |
| rs6010648 | 1.00[YRI][hapmap] |
| rs6010652 | 1.00[CEU][hapmap] |
| rs6011118 | 1.00[CEU][hapmap] |
| rs6062547 | 1.00[CEU][hapmap] |
| rs6089970 | 1.00[YRI][hapmap] |
| rs6122154 | 1.00[YRI][hapmap] |
| rs66791168 | 0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs66887040 | 0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73149487 | 0.85[EUR][1000 genomes] |
| rs755920 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A4RG | Distal transcriptional regulation |
| ENSG00000269223 | Distal transcriptional regulation |
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014