SNP Report
Basic Infomation
| Name | rs6062547 dbSNP |
|---|---|
| Location | chr:20,62481460 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11086130 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs11697094 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11697746 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11698493 | 0.89[CEU][hapmap];1.00[YRI][hapmap] |
| rs12479805 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes] |
| rs12624434 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12624502 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12624512 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4809238 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6010652 | 1.00[CEU][hapmap] |
| rs6010675 | 1.00[CEU][hapmap] |
| rs6011118 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs6011186 | 0.90[EUR][1000 genomes] |
| rs66641436 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs66791168 | 0.84[AMR][1000 genomes] |
| rs66887040 | 0.84[AMR][1000 genomes] |
| rs73624755 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs755920 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZBTB46 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014