SNP Report
Basic Infomation
| Name | rs12624434 dbSNP |
|---|---|
| Location | chr:20,62482223 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11086129 | 0.84[AFR][1000 genomes] |
| rs11697094 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11697746 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11700373 | 0.84[AFR][1000 genomes] |
| rs12624502 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12624512 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4809238 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4809360 | 0.84[AFR][1000 genomes] |
| rs60086020 | 0.84[AFR][1000 genomes] |
| rs6011186 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6011187 | 0.81[AFR][1000 genomes] |
| rs6062547 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs66641436 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs66791168 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs66887040 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73149500 | 0.91[AFR][1000 genomes] |
| rs73624755 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZBTB46 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014